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May 6, 2013
“[Dr. de Duve] discovered the lysosome, a tiny sack filled with enzymes that functions like a garbage disposal, destroying bacteria or parts of the cell that are old or worn out. His discoveries helped unravel the biology of Tay-Sachs disease and more than two dozen other genetic diseases in which a shortage of lysosomal enzymes causes waste to accumulate in cells and eventually destroy them.”
April 12, 2013
“Bacteriophages, viruses that infect bacterial cells, employ an arsenal of chemical weapons. Microbiologist Vincent Fischetti of Rockefeller University describes using tricks learned from the phage in developing new antibiotics that may be effective even where others fail.”
April 2, 2013
“A working group at the N.I.H., described by the officials as a ‘dream team,’ and led by Cori Bargmann of Rockefeller University and William Newsome of Stanford University, will be charged with coming up with a plan, a time frame, specific goals and cost estimates for future budgets.”
April 1, 2013
“Erec Stebbins is an award-winning researcher at Rockefeller University. In his spare time, he has written an absorbing thriller about an FBI agent tracking down home grown terrorists. The book is called The Ragnarök Conspiracy.”
March 6, 2013
“In short, even prior to the 5 percent budget cut brought about last week by sequestration, our basic research enterprise has been in crisis. This erosion in our basic science investment has occurred at the very time that the biomedical revolution has opened huge opportunities to advance our knowledge of disease.”
February 23, 2013
“Dr. Cori Bargmann of Rockefeller University received an unexpected phone call…she was told that she had been chosen to receive a $3 million cash prize for her research in brain development, which will hopefully provide breakthroughs in disorders like autism and schizophrenia.”
February 20, 2013
“Be physically active, get a good diet, [get] adequate sleep, [create] social support, have a good hobby, meditate. All of these things really are common sense and now we know they do have the benefits of improving our brain architecture.”
January 26, 2013
“Elsewhere, research by one of us, Bruce McEwen, has closed in on how pre- and postnatal stress affects a complex set of interactions between the hypothalamus, the pituitary gland and the adrenal glands (the HPA axis). These are all part of the body’s neuroendocrine system, which controls our reactions to stress and regulates many things, including digestion, the immune system, emotions, sexuality and the storage and expenditure of energy.”
January 22, 2013
“High school students supervised by New York’s Rockefeller University found alarming results in testing done over the last three years. Sixteen percent of the grocery store food they DNA tested, from expensive sheep’s milk cheese that had only cow DNA in it, to caviar that wasn’t made of sturgeon eggs, to pet food with no meat, all had counterfeit ingredients.”
January 20, 2013
“We were all brought up to think the genome was it,” said Rockefeller University molecular biologist C. David Allis. “It’s really been a watershed in understanding that there is something beyond the genome.”
January 3, 2013
“A consortium of scientists [including The Rockefeller University] announced that they had devised a way to enable simultaneous editing of several sites within the mammalian genome. The technology, based on a bacterial defense system against viruses, could offer an easy-to-use, less-expensive way to engineer organisms that produce biofuels, to design animal models to study human disease, and to develop new therapies, among other potential applications.”
December 21, 2012
“In the long struggle that was to come, [Ralph] Steinman would try anything and everything that might extend his life, but he placed his greatest hope in a field he helped create, one based on discoveries for which he would earn his Nobel Prize. He hoped to reprogram his immune cells to defeat his cancer — to concoct a set of treatments from his body’s own ingredients, which could take over from his chemotherapy and form a customized, dynamic treatment for his disease.”
December 20, 2012
“Humanity has reached what Rockefeller University scientists, in a new report, call ‘peak farmland.’ In the next half-century, a geographical area more than twice the size of France — or equivalent to 10 Iowas — will return to its natural state from farmland, they predict.”
December 20, 2012
“[O]ceans have actually become very loud due to man-made noise from oil rigs, sonar and ship propellers. And scientists are worried that all that added noise is hurting marine life. So they’re planning a massive experiment to quiet the ocean and study what kind of impact that quieting has. It’s called the ‘International Quiet Ocean Experiment’. WBUR All Things Considered host Sacha Pfeiffer spoke about this project with Jesse Ausubel, director of the Program for the Human Environment at Rockefeller University in New York and an adjunct faculty member at the Woods Hole Oceanographic Institution.”
October 15, 2012
“The research re-energizes a century-old treatment method that was abandoned with the rise of antibiotics during World War II. As germs have built up a resistance to those drugs in recent years, scientists are seeking alternatives and the virus strategy “is in vogue again,” said Vincent Fischetti, a biologist at Rockefeller University in New York who is one of the pioneers of the revived approach.”
September 12, 2012
“The exercise in this experiment was quite mild,” [Bruce S. McEwen] says — the equivalent of jogging at a pace at which someone could speak (or squeak) to a companion. “That’s achievable for most people,” he concludes, “and the evidence suggests that it will improve brain health.”
September 12, 2012
“Is there a less polarized way to think about the future of farming? Jesse H. Ausubel, an environmental scientist who directs the Program for the Human Environment at Rockefeller University, thinks he’s found one… His claim is that high-yield farming, that is, high-tech, non-organic agricultural practices that produce more crops per square foot, is actually kinder to the environment than lower-tech, organic farming.”
September 3, 2012
“More broadly, [Paul Nurse] doesn’t fret about American dominance. That is just the way it is. Perhaps some cultural differences even accrue to the British side of the ledger. ‘The U.S.A. has a very strong work ethic, and you keep a very close eye to the cutting edge,’ he says. ‘We are a bit lazier. We drink more. But sometimes the science we produce is rather quirkier and more innovative.’”
August 7, 2012
“These days electricity is so important to industrial society that providing adequate power isn’t good enough. For example, businesses that rely on the Internet simply can’t afford to be without power, even for a minute. Sure, it was a nuisance for Indian commuters on electric trains to get stranded. But, [Jesse] Ausubel says, the risk to our interconnected world runs much deeper. ‘It’s not just the railroads stopping, it really is the signal that if you want to be in the 21st century economy, you need to be very, very good at electricity,’ he says.”
August 6, 2012
“On the other hand, ask [Jesse Ausubel] about climate change (a subject he helped make the hot topic it is today), or overpopulation, or deforestation and you’ll get a surprisingly reassuring answer: things are getting better, we’re on the right track. It’s an attitude based on his extensive analyses of past trends in energy production, population growth, consumer behavior, and a host of other factors.”
July 20, 2012
“The first trials for patient safety are expected to start this year. It is a moment that Vincent Fischetti, a 71-year-old microbiologist at the Rockefeller University, has been approaching for decades. A child of working-class parents on Long Island, he once thought he would be a dentist before getting hooked on microbiology as an undergraduate.”
July 9, 2012
“We asked Dr. Jules Hirsch, emeritus professor and emeritus physician in chief at Rockefeller University, who has been researching obesity for nearly 60 years, about the state of the research. Dr. Hirsch…wrote some of the classic papers describing why it is so hard to lose weight and why it usually comes back.”
July 2, 2012
“‘We had no winter in the Northeast this year, and so there’s a lot of predictions from mosquito control experts that we’re going to have a really huge season of high populations of mosquitoes, and so with that, more disease transmission,’ said Leslie Vosshall, who runs Rockefeller University’s Laboratory of Neurogenetics and Behavior in New York City. Along with her staff, she’s trying to find out exactly how mosquitoes hunt humans.”
June 20, 2012
“That leads demographer Joel Cohen to predict that ‘many of us may live to see population peak in the middle of this century.’ If so, that would fulfill the first necessary condition to begin to reduce our demands on the planet.”
“An analysis by Jesse Ausubel and Paul Waggoner of Rockefeller University in New York City suggests that this trend of more economic bang per resource buck is widespread among developing economies, following an initial ‘cheap and dirty’ phase of growth.”
May 20, 2012
“‘They’re hunters,’ says Leslie Vosshall, the Robin Chemers Neustein Professor at the Rockefeller University of New York, an expert on the science of smell and someone who is not afraid to put her arm into a chamber of mosquitoes and get bitten a lot. ‘And they’ve adapted to be very sensitive to the smell of their prey, be it birds or humans.’”
May 14, 2012
“Nature is a great architect, and the vascular network – or veins – of a leaf are key to its structure. Mathematical physicists [Marcelo Magnasco and Eleni Katifori] at Rockefeller University use fluorescent dye and time lapse photography to digitally study microscopic patterns within these vascular networks in order to better understand how nutrients flow through the leaf and into the plant’s cells.”
May 3, 2012
“The work, in which a team used radio waves to switch on engineered insulin-producing genes in mice, is published today in Science. Jeffrey Friedman, a molecular geneticist at the Rockefeller University in New York and lead author of the study, says that in the short term, the results will lead to better tools to allow scientists to manipulate cells non-invasively. But with refinement, he thinks, clinical applications could also be possible.”
April 19, 2012
“A pair of Rockefeller University scientists will forever be honored with a new professorship, designed to pay tribute to the spirit of collaboration and mentoring. It was 1970 when Ralph M. Steinman came to Rockefeller University to be a postdoc in the lab of Zanvil A. Cohn. It was in those first few years of research on how an immune response is triggered in the human body, that the men came to identify a novel cell type. They coined the term dendritic cells.”
March 28, 2012
“Dr. James E. Darnell Jr. and Robert G. Roeder, Ph.D., both of whom work at Rockefeller University in New York City, will receive the [Albany Medical Center] prize during a May 11 ceremony in Albany. The $500,000 prize is the largest award in medicine and science in the United States. Darnell and Roeder, working separately over more than five decades, discovered how cells work and control protein production — activities that are the foundation for every process in the body.”
March 23, 2012
“A former student and teacher duo at the Massachusetts Institute of Technology will receive $250,000 from the March of Dimes next month for creating advances in treating skin cancers, severe burns and other skin diseases…[Elaine] Fuchs began working in Green’s lab in 1977 and throughout their careers they have shared their scientific findings, many of which have translated into specific treatments toward pioneering new technologies that explain the molecular underpinnings of skin stem cells and inherited skin disorders.”
February 7, 2012
“Norton D. Zinder, a researcher who helped lay the basis for the new field of molecular biology in the 1950s and ’60s and who played a crucial role in the politics of decoding the human genome, died on Friday in a nursing home in the Riverdale section of the Bronx. He was 83.”
December 19, 2011
“But the rule against posthumous awards has now been violated several times — most recently this month, when the prize in medicine was given to the widow of Dr. Ralph M. Steinman, a scientist at Rockefeller University in Manhattan who died of pancreatic cancer at age 68 on Sept. 30, three days before his election.”
November 30, 2011
Yale Environment 360
The New Story of Stuff: Can We Consume Less?
“Optimists such as Jesse Ausubel, director of the Program for the Human Environment at The Rockefeller University in New York, see a long-term and unstoppable trend that is the logical outcome of what economists call the environmental Kuznets curve, after its inventor Simon Kuznets. This suggests that as countries industrialize, they pass through an early “cheap and dirty” phase when they waste resources and generate massive pollution, but they pass a tipping point beyond which they begin to invest in using resources more efficiently.”
November 14, 2011
“Sir Paul Nurse, 62, has the effusive and infectious enthusiasm of a natural leader who, it is obvious, leads by example rather than threat. By his own admission, he has an idealistic view of science ‘as a liberalising and progressive force for humanity.’ He sees science as a truly international activity that breaks down barriers between the peoples of the world. Science, he says, is a ‘profoundly aesthetic experience which gives pleasure not unlike the reading of a great poem.’”
November 8, 2011
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93-Year-Old Wins Prestigious Science Award
“At 93-years-old, Brenda Milner is responsible for some of the biggest discoveries in the science of memory. And she’s still working today, at McGill University in Montreal, Canada. She’s also the winner of the prestigious Pearl Meister Greengard Prize for her achievements, which includes $100,000 in award money.”
November 6, 2011
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‘Nosy’ and Observant, a Neuroscientist Continues Her Memorable Career at 93
“Psychology students who read about Brenda Milner’s seminal work with amnesia patients nearly 60 years ago might not suspect that she is, at 93, still engaged full time in research and teaching. Nor that last week, in New York, she would be picking up a major award, the Pearl Meister Greengard Prize, which honors female researchers who have made extraordinary contributions to the biomedical sciences. She is the eighth recipient of the prize since its creation by Paul Greengard, a neuroscientist at Rockefeller University, who used his own funds, including his award for winning the Nobel Prize in Physiology or Medicine, along with contributions from his university and other donors.”
October 31, 2011
Among large economies, the United States is second only to Australia in the amount of carbon dioxide it emits per capita, according to the latest figures from the federal Energy Information Administration. “Every person you add to the country makes all these tremendous demands on the environment,” said Joel E. Cohen, chief of the Laboratory of Populations at Rockefeller University and Columbia University. But experts are reluctant to suggest an ideal birth rate. “There isn’t any magic number,” Dr. Cohen said.
October 26, 2011
“But it is also possible, said Dr. Jules Hirsch of Rockefeller University, that researchers just do not know enough about obesity to prescribe solutions. One thing is clear, he said: ‘A vast effort to persuade the public to change its habits just hasn’t prevented or cured obesity.’ ‘We need more knowledge,’ Dr. Hirsch said. ‘Condemning the public for their uncontrollable hedonism and the food industry for its inequities just doesn’t seem to be turning the tide.’”
September 19, 2011
“Across town at the Rockefeller University, the new science facility, by Mitchell/Giurgola Architects, exists for no other purpose than to bring people out of isolation. It’s an addendum, a voluptuous glass link, seven stories high, interposed between two preexisting laboratory buildings. You enter what appears to be a modest lobby, and ahead of you the space opens up, Guggenheim-like, into an atrium whose floorplan is elliptical and whose side elevation is shaped like an hourglass. Everything about this unusual building tells you that scientific research can be conducted in an environment of both zest and dignity.”
September 16, 2011
“‘Over 2,700 marine scientists in over 80 nations made the first-ever census of marine life over the past decade,” said Jesse Ausubel, director of the Program for the Human Environment at Rockefeller University, speaking recently at a packed Secret Science Club program at the Bell House near the Gowanus Canal.”
August 30, 2011
“Peter Holt, a researcher at Rockefeller University in New York, said that overweight patients who have the common ‘stomach stapling’ operations are likely to have large concentrations of alcohol in the blood even if they drink little, which take a long time to wear off. As a result, Dr. Holt suggested that all patients who undergo weight-loss surgery should be warned about the effects on their ability to drink and should think about avoiding alcohol completely if they drive.”
August 21, 2011
“Dr. Greengard, 85, is still making breakthroughs. In an offshoot of his award-winning research, the director of the Fisher Center for Alzheimer’s Research recently discovered a new pathway for potentially treating the disease. He identified a protein in mice that stimulates the production of beta amyloid, a substance that forms plaque in the brain and disrupts memory and other cognitive functions. And in an interesting development, he found that a cancer drug, Gleevec, disarms the protein.”
August 15, 2011
“Consider the investigation of Mike Rossner, executive director of the Rockefeller University Press. In 2002, while trying to format a scientific image in Photoshop that was going to appear in one of the journals, Rossner noticed that the background of the image contained different intensities of pixels. This led Rossner and his colleagues to begin analyzing every image in every accepted paper.”
August 13, 2011
“‘The problems are here and now,’ said Joel Cohen, head of the laboratory of populations at New York’s Rockefeller University. ‘People forget there are a billion chronically hungry people; every day those people wake up and they’re hungry all day, and they go to sleep hungry.’”
August 5, 2011
After the success of protease inhibitors in HIV, research groups around the world began investigating whether the same mechanism would work for hepatitis C. In 1997 Charles M. Rice, now head of the laboratory of virology and infectious disease at the Rockefeller University, showed that mutating the viral protease in hepatitis C–infected chimpanzees stopped the virus, the first clue about the enzyme’s importance.
June 7, 2011

Joel E. Cohen: “[René Dubos] wrote near the end of this essay: ‘For some human beings, perhaps for most, living implies the kind of Life envisaged by Spinoza — with the effort that caps nature with culture, existence with meaning, and facts with forms.’ Dubos was one of the lucky humans whose efforts capped nature with culture, existence with meaning, and facts with forms.”
June 6, 2011
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“With the Great Reversal, the study‘s authors believe a tipping point has been reached, with countries now able to pursue policies to boost their forests’ thickness and carbon capacities dramatically. Jesse Ausubel, a director at the Rockefeller University and a co-author, said: ‘The enlarging forests in almost 50 nations studied may signal the start of a welcome and necessary restoration.’”
May 5, 2011
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Joel E. Cohen: “Of today’s (almost) 7 billion people, nearly one billion are chronically hungry. Why? Roughly one third of grain is consumed by domestic animals. More than one sixth of grain goes into industrial products like biofuels and starch, seeds and other uses. Less than half of world cereal production feeds humans. The world chooses to feed its machines and its domestic animals before it feeds its people.”
April 27, 2011
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“‘To tell different wines apart, a good memory is required,’ says Leslie Vosshall, a professor at Rockefeller University. ‘It would be like going to a museum where someone shows you 10 paintings and then you have to express some preference about them. It would help if you could say, well in the first painting, I really liked the way the skirts were painted, and in the second, the facial expressions were really good.’”
April 26, 2011
“Researchers found that painkillers such as aspirin and ibuprofen appear to decrease the effectiveness of a popular class of antidepressants that includes Prozac and Celexa. The finding, published Monday, may help explain why even the most effective antidepressants don’t work for everyone. At best only about two-thirds of patients respond effectively to Celexa and other selective serotonin reuptake inhibitors, or SSRIs. ‘Physicians should consider the advantages and disadvantages of giving an anti-inflammatory with the antidepressant depending on how severe the pain is and how depressed they are,’ said Paul Greengard, senior author on the paper.”
April 26, 2011
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“‘Dinochelus ausubeli’ was the name conferred earlier this year on a strange deep sea monster, a lobster discovered off the Philippine coast whose right claw is elongated into a fearsome pincer. The new species was named not after its discoverer, but in honor of the person under whose auspices a fleet of 540 ships from 80 nations has found the lobster and 6,000 other new marine species in the last 10 years. He is Jesse H. Ausubel, a Rockefeller University environmental researcher who is also vice president of the Alfred P. Sloan Foundation of New York.”
March 6, 2011
“One hundred thousand of the world’s most valuable rodents live on York Avenue as residents of Rockefeller University, whose relative obscurity among the city’s higher-learning establishments belies its elite status in the medical community. (Twenty-three Nobel laureates have done work at the school, which doesn’t offer undergrad degrees.) A few of its more cooperative mice — and one rat — recently took turns in front of our cameras.”
March 4, 2011
“If you were writing a play, the sequence of the genome is like having the list of characters at the beginning of the play. You can’t write the play without the list of characters, that’s essential, but actually there’s a lot of work that has to go on that depends on that human genome sequence but which isn’t simply a consequence of it. It’s a prerequisite but it’s not the end of the story.”
February 22, 2011
“So what’s not right about food? Based on an analysis of Earth’s resources, our planet should be able to sustain 11 billion people on a vegetarian diet, said Joel Cohen, a population expert at the Rockefeller University. But among the current population of 7 billion, ‘a billion of those are hungry’ already, he said. One of the reasons he sees is that humans are sharing their agricultural grains with livestock as well as machines (in the form of feedstock for biofuel conversion). ‘We’re using less than half of the cereal we grow to feed humans,’ Cohen said.”
February 21, 2011

“‘It took until about 1800 or 1825 to put the first billion people on the planet. We added the most recent billion in 12 or 13 years. We anticipate two billion more by 2050.’ That’s Joel Cohen, head of the Laboratory of Populations at Rockefeller University in New York. ‘In the last half century, people have estimated human-carrying capacities for the Earth that have ranged from less than one billion to more than a trillion. They can’t all be right. In fact, those numbers are political numbers, not scientific numbers. Because the question how many people can the earth support is an incomplete question, and doesn’t take account of with what technologies, at what average level of well-being, with what distribution of income, with what political and economic institutions.’”
May 1, 2013
Cell online: May 1, 2013
Cyclic [G(2',5')pA(3',5')p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase
Pu Gao, Manuel Ascano, Yang Wu, Winfried Barchet, Barbara L. Gaffney, Thomas Zillinger, Artem A. Serganov, Yizhou Liu, Roger A. Jones, Gunther Hartmann, Thomas Tuschl and Dinshaw J. Patel
April 25, 2013
Cell 153: 614-627
Proteasome regulation by ADP-ribosylation
Park F. Cho-Park and Hermann Steller
April 24, 2013
Nature online: April 24, 2013
Random convergence of olfactory inputs in the Drosophila mushroom body
Sophie J. C. Caron, Vanessa Ruta, L. F. Abbott and Richard Axel
April 11, 2013
Science online: April 11, 2013
Ribosomal protein SA haploinsufficiency in humans with isolated congenital asplenia
Alexandre Bolze, Nizar Mahlaoui, Minji Byun, Bridget Turner, Nikolaus Trede, Steven R. Ellis, Avinash Abhyankar, Yuval Itan, Etienne Patin, Samuel Brebner, Paul Sackstein, Anne Puel, Capucine Picard, Laurent Abel, Lluis Quintana-Murci, Saul N. Faust, Anthony P. Williams, Richard Baretto, Michael Duddridge, Usha Kini, Andrew J. Pollard, Catherine Gaud, Pierre Frange, Daniel Orbach, Jean-Francois Emile, Jean-Louis Stephan, Ricardo Sorensen, Alessandro Plebani, Lennart Hammarstrom, Mary Ellen Conley, Licia Selleri and Jean-Laurent Casanova
April 4, 2013
Nature 496: 110-113
SIRT6 regulates TNF-α secretion through hydrolysis of long-chain fatty acyl lysine
Hong Jiang, Saba Khan, Yi Wang, Guillaume Charron, Bin He, Carlos Sebastian, Jintang Du, Ray Kim, Eva Ge, Raul Mostoslavsky, Howard C. Hang, Quan Hao and Hening Lin
March 28, 2013
Cell 153: 126-138
Somatic mutations of the immunoglobulin framework are generally required for broad and potent HIV-1 neutralization
Florian Klein, Ron Diskin, Johannes F. Scheid, Christian Gaebler, Hugo Mouquet, Ivelin S. Georgiev, Marie Pancera, Tongqing Zhou, Reha-Baris Incesu, Brooks Zhongzheng Fu, Priyanthi N.P. Gnanapragasam, Thiago Y. Oliveira, Michael S. Seaman, Peter D. Kwong, Pamela J. Bjorkman and Michel C. Nussenzweig
March 28, 2013
Molecular Cell 49:1121-1133
The n-SET domain of Set1 regulates H2B ubiquitylation-dependent H3K4 methylation
Jaehoon Kim, Jung-Ae Kim, Robert K. McGinty, Uyen T.T. Nguyen, Tom W. Muir, C. David Allis and Robert G. Roeder
March 28, 2013
Science online: March 28, 2013
Inhibition of PRC2 activity by a gain-of-function H3 mutation found in pediatric glioblastoma
Peter W. Lewis, Manuel M. Müller, Matthew S. Koletsky, Francisco Cordero, Shu Lin, Laura A. Banaszynski, Benjamin A. Garcia, Tom W. Muir, Oren J. Becher and C. David Allis
March 27, 2013
Proceedings of the National Academy of Sciences USA online: March 27, 2013
A phase transition in the first passage of a Brownian process through a fluctuating boundary with implications for neural coding
Thibaud Taillefumier and Marcelo O. Magnasco
March 27, 2013
Nature online: March 27, 2013
A solution to release twisted DNA during chromosome replication by coupled DNA polymerases
Isabel Kurth, Roxana E. Georgescu and Mike E. O’Donnell
March 22, 2013
Proceedings of the National Academy of Sciences USA online: March 22, 2013
Structural basis for HIV-1 gp120 recognition by a germ-line version of a broadly neutralizing antibody
Louise Scharf, Anthony P. West, Jr., Han Gao, Terri Lee, Johannes F. Scheid, Michel C. Nussenzweig, Pamela J. Bjorkman and Ron Diskin
March 18, 2013
Proceedings of the National Academy of Sciences USA online: March 18, 2013
The human gene connectome as a map of short cuts for morbid allele discovery
Yuval Itana, Shen-Ying Zhang, Guillaume Vogt, Avinash Abhyankar, Melina Herman, Patrick Nitschke, Dror Fried, Lluis Quintana-Murci, Laurent Abel and Jean-Laurent Casanova
March 18, 2013
Proceedings of the National Academy of Sciences USA online: March 18, 2013
Effects of cochlear loading on the motility of active outer hair cells
Dáibhid Ó Maoiléidigh and A. J. Hudspeth
March 18, 2013
Proceedings of the National Academy of Sciences USA online: March 18, 2013
RecA acts as a switch to regulate polymerase occupancy in a moving replication fork
Chiara Indiani, Meghna Patel, Myron F. Goodman and Mike E. O’Donnell
March 11, 2013
Proceedings of the National Academy of Sciences USA online: March 11, 2013
Ring cycle for dilating and constricting the nuclear pore
Sozanne R. Solmaz, Günter Blobel and Ivo Melcák
March 1, 2013
Nature Biotechnology 31: 233-239
RNA-guided editing of bacterial genomes using CRISPR-Cas systems
Wenyan Jiang, David Bikard, David Cox, Feng Zhang and Luciano A Marraffini
February 28, 2013
Cell 152: 1021-1036
H3K4me3 interactions with TAF3 regulate preinitiation complex assembly and selective gene activation
Shannon M. Lauberth, Takahiro Nakayama, Xiaolin Wu, Andrea L. Ferris, Zhanyun Tang, Stephen H. Hughes and Robert G. Roeder
February 25, 2013
Proceedings of the National Academy of Sciences USA online: February 25, 2013
Comprehensive profiling of circulating microRNA via small RNA sequencing of cDNA libraries reveals biomarker potential and limitations
Zev Williams, Iddo Z. Ben-Dov, Rony Elias, Aleksandra Mihailovic, Miguel Brown, Zev Rosenwaks and Thomas Tuschl
February 21, 2013
Genes and Development online: February 21, 2013
Translational profiling of hypocretin neurons identifies candidate molecules for sleep regulation
Jasbir Dalal, Jee Hoon Roh, Susan E. Maloney, Afua Akuffo, Samir Shah, Han Yuan, Brie Wamsley, Wendell B. Jones, Cristina de Guzman Strong, Paul A. Gray, David M. Holtzman, Nathaniel Heintz and Joseph D. Dougherty
February 19, 2013
Proceedings of the National Academy of Sciences USA online: February 19, 2013
Phenotypic model for early T-cell activation displaying sensitivity, specificity and antagonism
Paul François, Guillaume Voisinne, Eric D. Siggia, Grégoire Altan-Bonnet and Massimo Vergassola
February 19, 2013
Proceedings of the National Academy of Sciences USA online: February 19, 2013
DLK initiates a transcriptional program that couples apoptotic and regenerative responses to axonal injury
Trent A. Watkins, Bei Wang, Sarah Huntwork-Rodriguez, Jing Yang, Zhiyu Jiang, Jeffrey Eastham-Anderson, Zora Modrusan, Joshua S. Kaminker, Marc Tessier-Lavigne and Joseph W. Lewcock
February 19, 2013
Proceedings of the National Academy of Sciences USA online: February 19, 2013
Related F-box proteins control cell death in Caenorhabditis elegans and human lymphoma
Michael Chiorazzi, Lixin Rui, Yandan Yang, Michele Ceribelli, Nima Tishbi, Carine W. Maurer, Stella M. Ranuncolo, Hong Zhao, Weihong Xu, Wing-Chung C. Chan, Elaine S. Jaffe, Randy D. Gascoyne, Elias Campo, Andreas Rosenwald, German Ott, Jan Delabie, Lisa M. Rimsza, Shai Shaham and Louis M. Staudt
February 18, 2013
Current Biology 23: 328-332
Enforcement of reproductive synchrony via policing in a clonal ant
Serafino Teseo, Daniel J.C. Kronauer, Pierre Jaisson and Nicolas Châline
February 17, 2013
Nature Chemical Biology online: February 17, 2013
Induction of innate and adaptive immunity by delivery of poly dA:dT to dendritic cells
Scott Barbuto, Juliana Idoyaga, Miquel Vila-Perelló, Maria P. Longhi, Gaëlle Breton, Ralph M. Steinman and Tom W. Muir
February 14, 2013
Cell 152:831-843
SMARCA3, a chromatin-remodeling factor, is required for p11-dependent antidepressant action
Yong-Seok Oh, Pu Gao, Ko-Woon Lee, Ilaria Ceglia, Ji-Seon Seo, Xiaozhu Zhang, Jung-Hyuck Ahn, Brian T. Chait, Dinshaw J. Patel, Yong Kim and Paul Greengard
February 14, 2013
Proceedings of the National Academy of Sciences USA online: February 14, 2013
Histone H2B ubiquitin ligase RNF20 is required for MLL-rearranged leukemia
Eric Wang, Shinpei Kawaoka, Ming Yu, Junwei Shi, Ting Ni, Wenjing Yang, Jun Zhu, Robert G. Roeder and Christopher R. Vakoc
February 6, 2013
Nature online: February 6, 2013
NFIB is a governor of epithelial-melanocyte stem cell behaviour in a shared niche
Chiung-Ying Chang, H. Amalia Pasolli, Eugenia G. Giannopoulou, Géraldine Guasch, Richard M. Gronostajski, Olivier Elemento and Elaine Fuchs
February 4, 2013
Proceedings of the National Academy of Sciences USA online: February 4, 2013
Innate immunity receptor CD36 promotes cerebral amyloid angiopathy
Laibaik Park, Joan Zhou, Ping Zhou, Rose Pistick, Sleiman El Jamal, Linda Younkin, Joseph Pierce, Andrea Arreguin, Josef Anrather, Steven G. Younkin, George A. Carlson, Bruce S. McEwen and Costantino Iadecola
January 31, 2013
Cell 152: 431-441
Structural basis of transcriptional pausing in bacteria
Albert Weixlbaumer, Katherine Leon, Robert Landick and Seth A. Darst
January 23, 2013
Proceedings of the National Academy of Sciences USA online: January 22, 2013
Role of 53BP1 oligomerization in regulating double-strand break repair
Francisca Lottersberger, Anne Bothmer, Davide F. Robbiani, Michel C. Nussenzweig and Titia de Lange
January 22, 2013
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Nature 492: 382–386
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Proceedings of the National Academy of Sciences USA 109: 21076-21080
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Rapid regulation of depression-related behaviours by control of midbrain dopamine neurons
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Science 338: 1352-1353
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Nature online: October 28, 2012
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Nature online: October 24, 2012
HIV therapy by a combination of broadly neutralizing antibodies in humanized mice
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Nature Genetics 44: 1255-1259
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Nature online: October 3, 2012
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Nature Immunology online: September 23, 2012
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Nature online: September 9, 2012
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Proceedings of the National Academy of Sciences USA online: August 20, 2012
Dengue reporter viruses reveal viral dynamics in interferon receptor-deficient mice and sensitivity to interferon effectors in vitro
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The BMP inhibitor coco reactivates breast cancer cells at lung metastatic sites
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Cell Host & Microbe 12: 177-186
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Proceedings of the National Academy of Sciences USA online: August 13, 2012
Structural investigations of a Podoviridae streptococcus phage C1, implications for the mechanism of viral entry
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Neuron 75: 437-450
Muscleblind-like 2-Mediated Alternative Splicing in the Developing Brain and Dysregulation in Myotonic Dystrophy
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The Journal of Experimental Medicine online: August 7, 2012
Heterozygous TBK1 mutations impair TLR3 immunity and underlie herpes simplex encephalitis of childhood
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Science online: August 2, 2012
Mycobacterial Disease and Impaired IFN-γ Immunity in Humans with Inherited ISG15 Deficiency
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Human RHOH deficiency causes T cell defects and susceptibility to EV-HPV infections
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Broad neutralization by a combination of antibodies recognizing the CD4 binding site and a new conformational epitope on the HIV-1 envelope protein
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X-ray crystal structure of the streptococcal specific phage lysin PlyC
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Proceedings of the National Academy of Sciences USA online: July 17, 2012
Mild exercise increases dihydrotestosterone in hippocampus providing evidence for androgenic mediation of neurogenesis
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Proceedings of the National Academy of Sciences USA 109: 11699-11704
Molecular mechanism of proton transport in CLC Cl-/H+ exchange transporters
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July 15, 2012
Nature Structural & Molecular Biology online: July 15, 2012
Phosphorylation of histone H3 Ser10 establishes a hierarchy for subsequent intramolecular modification events
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Speed, dissipation, and error in kinetic proofreading
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July 10, 2012
Molecular Psychiatry online: July 10, 2012
Disruption of fatty acid amide hydrolase activity prevents the effects of chronic stress on anxiety and amygdalar microstructure
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Nature Genetics online: July 8, 2012
FAN1 mutations cause karyomegalic interstitial nephritis, linking chronic kidney failure to defective DNA damage repair
Weibin Zhou, Edgar A Otto, Andrew Cluckey, Rannar Airik, Toby W Hurd, Moumita Chaki, Katrina Diaz, Francis P Lach, Geoffrey R Bennett, Heon Yung Gee, Amiya K Ghosh, Sivakumar Natarajan, Supawat Thongthip, Uma Veturi, Susan J Allen, Sabine Janssen, Gokul Ramaswami, Joanne Dixon, Felix Burkhalter, Martin Spoendlin, Holger Moch, Michael J Mihatsch, Jerome Verine, Richard Reade, Hany Soliman, Michel Godin, Denes Kiss, Guido Monga, Gianna Mazzucco, Kerstin Amann, Ferruh Artunc, Ronald C Newland, Thorsten Wiech, Stefan Zschiedrich, Tobias B Huber, Andreas Friedl, Gisela G Slaats, Jaap A Joles, Roel Goldschmeding, Joseph Washburn, Rachel H Giles, Shawn Levy, Agata Smogorzewska and Friedhelm Hildebrandt
July 8, 2012
Nature Neuroscience online: July 8, 2012
Spontaneous activity regulates Robo1 transcription to mediate a switch in thalamocortical axon growth
Erik Mire, Cecilia Mezzera, Eduardo Leyva-Díaz, Ana V Paternain, Paola Squarzoni, Lisa Bluy, Mar Castillo-Paterna, María José López, Sandra Peregrín, Marc Tessier-Lavigne, Sonia Garel, Joan Galcerán, Juan Lerma and Guillermina López-Bendito
July 6, 2012
Cell 150: 136-150
Identification of Stem Cell Populations in Sweat
Glands and Ducts Reveals Roles in Homeostasis and Wound Repair
Catherine P. Lu, Lisa Polak, Ana Sofia Rocha, H. Amalia Pasolli, Shann-Ching Chen, Neha Sharma, Cedric Blanpain and Elaine Fuchs
July 6, 2012
Cell 150: 39-52
Telomeric 3′ Overhangs Derive from Resection by Exo1 and Apollo and Fill-In by POT1b-Associated CST
Peng Wu, Hiroyuki Takai and Titia de Lange
June 30, 2012
The Lancet 379: 2500
Herpes in STAT1 deficiency
Beáta Tóth, Leonóra Méhes, Szilvia Taskó, Zsuzsanna Szalai, Zsolt Tulassay, Sophie Cypowyj, Jean-Laurent Casanova, Anne Puel and László Maródi
June 26, 2012
Proceedings of the National Academy of Sciences USA 109: 10564-10569
Scale invariance in the dynamics of spontaneous behavior
Alex Proekt, Jayanth R. Banavar, Amos Maritan and Donald W. Pfaff
June 26, 2012
Proceedings of the National Academy of Sciences USA 109: 10352-10357
Mechanistic basis for low threshold mechanosensitivity in voltage-dependent K+ channels
Daniel Schmidt, Josefina del Mármol and Roderick MacKinnon
June 25, 2012
Proceedings of the National Academy of Sciences USA online: June 25, 2012
Cholinergic interneurons in the nucleus accumbens regulate depression-like behavior
Jennifer L. Warner-Schmidt, Eric F. Schmidt, John J. Marshall, Amanda J. Rubin, Margarita Arango-Lievano, Michael G. Kaplitt, Ines Ibañez-Tallon, Nathaniel Heintz and Paul Greengard
June 22, 2012
Cell 149: 1565-1577
Tiki1 Is Required for Head Formation via Wnt Cleavage-Oxidation and Inactivation
Xinjun Zhang, Jose Garcia Abreu, Chika Yokota, Bryan T. MacDonald, Sasha Singh, Karla Loureiro Almeida Coburn, Seong-Moon Cheong, Mingzi M. Zhang, Qi-Zhuang Ye, Howard C. Hang, Hanno Steen and Xi He
June 20, 2012
Proceedings of the National Academy of Sciences USA online: June 20, 2012
Apoptotic and antitumor activity of death receptor antibodies require inhibitory Fcγ receptor engagement
Fubin Li and Jeffrey V. Ravetch
June 18, 2012
Proceedings of the National Academy of Sciences USA online: June 18, 2012
Mouse model of endemic Burkitt translocations reveals the long-range boundaries of Ig-mediated oncogene deregulation
Alexander L. Kovalchuk, Camilo Ansarah-Sobrinho, Ofir Hakim, Wolfgang Resch, Helena Tolarová, Wendy Dubois, Arito Yamane, Makiko Takizawa, Isaac Klein, Gordon L. Hager, Herbert C. Morse III, Michael Potter, Michel C. Nussenzweig and Rafael Casellas
June 12, 2012
Cancer Cell 21: 765-766
Telomere-driven tetraploidization occurs in human cells undergoing crisis and promotes transformation of mouse cells
Teresa Davoli and Titia de Lange
June 11, 2012
Proceedings of the National Academy of Sciences USA online: June 11, 2012
Dynamics of TGF-β signaling reveal adaptive and pulsatile behaviors reflected in the nuclear localization of transcription factor Smad4
Aryeh Warmflash, Qixiang Zhang, Benoit Sorre, Alin Vonica, Eric D. Siggia and Ali H. Brivanlou
June 7, 2012
Science online: June 7, 2012
dSarm/Sarm1 Is Required for Activation of an Injury-Induced Axon Death Pathway
Jeannette M. Osterloh, Jing Yang, Timothy M. Rooney, A. Nicole Fox, Robert Adalbert, Eric H. Powell, Amy E. Sheehan, Michelle A. Avery, Rachel Hackett, Mary A. Logan, Jennifer M. MacDonald, Jennifer S. Ziegenfuss, Stefan Milde, Ying-Ju Hou, Carl Nathan, Aihao Ding, Robert H. Brown Jr., Laura Conforti, Michael Coleman, Marc Tessier-Lavigne, Stephan Züchner and Marc R. Freeman
May 25, 2012
Cell 149: 1164-1173
Contingency and statistical laws in replicate microbial closed ecosystems
Doeke R. Hekstra and Stanislas Leibler
May 25, 2012
Cell 149: 1152-1163
Identification of the Cortical Neurons that Mediate Antidepressant Responses
Eric F. Schmidt, Jennifer L. Warner-Schmidt, Benjamin G. Otopalik, Sarah B. Pickett, Paul Greengard and Nathaniel Heintz
May 21, 2012
Journal of Experimental Medicine online: May 21, 2012
Expression of the zinc finger transcription factor zDC (Zbtb46, Btbd4) defines the classical dendritic cell lineage
Matthew M. Meredith, Kang Liu, Guillaume Darrasse-Jeze, Alice O. Kamphorst, Heidi A. Schreiber, Pierre Guermonprez, Juliana Idoyaga, Cheolho Cheong, Kai-Hui Yao, Rachel E. Niec and Michel C. Nussenzweig
May 15, 2012
The EMBO Journal online: May 15, 2012
A dual function of Bcl11b/Ctip2 in hippocampal neurogenesis
Ruth Simon, Heike Brylka, Herbert Schwegler, Sathish Venkataramanappa, Jacqueline Andratschke, Christoph Wiegreffe, Pentao Liu, Elaine Fuchs, Nancy A Jenkins, Neal G Copeland, Carmen Birchmeier and Stefan Britsch
May 15, 2012
Developmental Cell 22: 913-926
Congenital Asplenia in Mice and Humans with Mutations in a Pbx/Nkx2-5/p15 Module
Matthew Koss, Alexandre Bolze, Andrea Brendolan, Matilde Saggese, Terence D. Capellini, Ekaterina Bojilova, Bertrand Boisson, Owen W.J. Prall, David A. Elliott, Mark Solloway, Elisa Lenti, Chisa Hidaka, Ching-Pin Chang, Nizar Mahlaoui, Richard P. Harvey, Jean-Laurent Casanova, Licia Selleri
May 7, 2012
Journal of Experimental Medicine 209: 1011-1028
Dll4-Notch signaling in Flt3-independent dendritic cell development and autoimmunity in mice
Fabienne Billiard, Camille Lobry, Guillaume Darrasse-Jèze, Janelle Waite, Xia Liu, Hugo Mouquet, Amanda DaNave, Michelle Tait, Juliana Idoyaga, Marylène Leboeuf, Christos A. Kyratsous, Jacquelynn Burton, Julie Kalter, Apostolos Klinakis, Wen Zhang, Gavin Thurston, Miriam Merad, Ralph M. Steinman, Andrew J. Murphy, George D. Yancopoulos, Iannis Aifantis and Dimitris Skokos
May 4, 2012
Science 336: 593-597
Removal of shelterin reveals the telomere end-protection problem
Agnel Sfeir and Titia de Lange
May 4, 2012
Science 336: 604-608
Radio-wave heating of iron oxide nanoparticles can regulate plasma glucose in mice
Sarah A. Stanley, Jennifer E. Gagner, Shadi Damanpour, Mitsukuni Yoshida, Jonathan S. Dordick and Jeffrey M. Friedman
April 17, 2012
Nature online: April 4, 2012
An RNA interference screen uncovers a new molecule in stem cell self-renewal and long-term regeneration
Ting Chen, Evan Heller, Slobodan Beronja, Naoki Oshimori, Nicole Stokes and Elaine Fuchs
April 17, 2012
Proceedings of the National Academy of Sciences USA 109: 6205-6210
Human broadly neutralizing antibodies to the envelope glycoprotein complex of hepatitis C virus
Erick Giang, Marcus Dorner, Jannick C. Prentoe, Marlène Dreux, Matthew J. Evans, Jens Bukh, Charles M. Rice, Alexander Ploss, Dennis R. Burton and Mansun Law
April 17, 2012
Proceedings of the National Academy of Sciences USA 109: 6181-6186
Mouse model recapitulating human Fcγ receptor structural and functional diversity
Patrick Smith, David J. DiLillo, Stylianos Bournazos,Fubin Li and Jeffrey V. Ravetch
April 17, 2012
Proceedings of the National Academy of Sciences USA 109: 6072-6077
RNA ligase RtcB splices 3′-phosphate and 5′-OH ends via covalent RtcB-(histidinyl)-GMP and
polynucleotide-(3′)pp(5′)G intermediates
Anupam K. Chakravartya, Roman Subbotin, Brian T. Chait and
Stewart Shuman
April 17, 2012
Proceedings of the National Academy of Sciences USA 109: 6175-6180
Viral-induced encephalitis initiates distinct and functional CD103+ CD11b+ brain dendritic cell populations within the olfactory bulb
Paul M. D’Agostinoa, Changsoo Kwaka, Haley A. Vecchiarellia, Judit Gal Totha, James M. Millera, Zahrah Masheeba, Bruce S. McEwen and Karen Bulloch
April 10, 2012
Proceedings of the National Academy of Sciences USA 109: 5779-5784
Mutagenesis of pairwise combinations of histone amino-terminal tails reveals functional redundancy in budding yeast
Jung-Ae Kima, Jer-Yuan Hsub, M. Mitchell Smithb and C. David Allis
April 1, 2012
Genes & Development 26: 693-704
Quantitative functions of Argonaute proteins in mammalian development
Dongmei Wang, Zhaojie Zhang, Evan O’Loughlin, Thomas Lee, Stephane Houel, Dónal O’Carroll, Alexander Tarakhovsky, Natalie G. Ahn and Rui Yi
March 30, 2012
Science 335: 1617–1621
Control of sleep by cyclin A and its regulator
Dragana Rogulja and Michael W. Young
We show that cyclin A (CycA) and regulator of cyclin A1, essential cell cycle factors, function in postmitotic neurons to promote sleep in Drosophila melanogaster. Reducing the abundance of CycA in neurons delayed the wake-sleep transition, caused multiple arousals from sleep, and reduced the homeostatic response to sleep deprivation.
March 29, 2012
New England Journal of Medicine 366: 1181–1189
Brodalumab, an anti–interleukin-17–receptor antibody for psoriasis
Kim A. Papp, Craig Leonardi, Alan Menter, Jean-Paul Ortonne, James G. Krueger, Gregory Kricorian, Girish Aras, Juan Li, Chris B. Russell, Elizabeth H.Z. Thompson, and Scott Baumgartner
We assessed the efficacy and safety of brodalumab (AMG 827), a human anti-interleukin-17-receptor monoclonal antibody, for the treatment of moderate-to-severe plaque psoriasis. An improvement of at least 75% and at least 90% in the PASI score at week 12 was seen in 77% and 72%, respectively, of the patients in the 140-mg brodalumab group and in 82% and 75%, respectively, of the patients in the 210-mg group, as compared with 0% in the placebo group (P<0.001 for all comparisons). Brodalumab significantly improved plaque psoriasis in this 12-week, phase 2 study.
March 18, 2012
Nature online: March 18, 2012
Small-molecule inhibitors of the AAA+ ATPase motor cytoplasmic dynein
Ari J. Firestone, Joshua S. Weinger, Maria Maldonado, Kari Barlan, Lance D. Langston, Michael O’Donnell, Vladimir I. Gelfand, Tarun M. Kapoor and James K. Chen
We describe the discovery of ciliobrevins, the first specific small-molecule antagonists of cytoplasmic dynein. Ciliobrevins perturb protein trafficking within the primary cilium, leading to their malformation and Hedgehog signalling blockade. Ciliobrevins also prevent spindle pole focusing, kinetochore-microtubule attachment, melanosome aggregation and peroxisome motility in cultured cells. We further demonstrate the ability of ciliobrevins to block dynein-dependent microtubule gliding and ATPase activity in vitro.
March 14, 2012
Nature 483: 428–433
Suppression of the antiviral response by an influenza histone mimic
Ivan Marazzi, Jessica S. Y. Ho, Jaehoon Kim, Balaji Manicassamy, Scott Dewell, Randy A. Albrecht, Chris W. Seibert, Uwe Schaefer, Kate L. Jeffrey, Rab K. Prinjha, Kevin Lee, Adolfo García-Sastre, Robert G. Roeder and Alexander Tarakhovsky
We describe a novel mechanism by which influenza virus affects host cells through the interaction of influenza non-structural protein 1 (NS1) with the infected cell epigenome. We show that the NS1 protein of influenza A H3N2 subtype possesses a histone-like sequence (histone mimic) that is used by the virus to target the human PAF1 transcription elongation complex (hPAF1C). We demonstrate that binding of NS1 to hPAF1C depends on the NS1 histone mimic and results in suppression of hPAF1C-mediated transcriptional elongation.
March 12, 2012
Journal of Experimental Medicine 209: 661-669
Histone H3 lysine 9 di-methylation as an epigenetic signature of the interferon response
Terry C. Fang, Uwe Schaefer, Ingrid Mecklenbrauker, Astrid Stienen, Scott Dewell, Marie S. Chen, Inmaculada Rioja, Valentino Parravicini, Rab K. Prinjha, Rohit Chandwani, Margaret R. MacDonald, Kevin Lee, Charles M. Rice and Alexander Tarakhovsky
Effective antiviral immunity depends on the ability of infected cells or cells
triggered with virus-derived nucleic acids to produce type I interferon (IFN), which activates transcription of numerous antiviral genes. However, disproportionately strong or chronic IFN expression is a common cause of inflammatory and autoimmune diseases. We describe an epigenetic mechanism that determines cell type–specific differences in IFN and IFN-stimulated gene (ISG) expression in response to exogenous signals.
February 24, 2012
Science 335: 970–973
Control of nonapoptotic developmental cell death in Caenorhabditis elegans by a polyglutamine-repeat protein
Elyse S. Blum, Mary C. Abraham, Satoshi Yoshimura, Yun Lu and Shai Shaham
In Caenorhabditis elegans, programmed death of the linker cell, which leads gonadal elongation, proceeds independently of caspases and apoptotic effectors. To identify genes promoting linker-cell death, we performed a genome-wide RNA interference screen. We show that linker-cell death requires the gene pqn-41, encoding an endogenous polyglutamine-repeat protein.
February 7, 2012
Nature online: February 7, 2012
DNA damage defines sites of recurrent chromosomal translocations in B lymphocytes
Ofir Hakim, Wolfgang Resch, Arito Yamane, Isaac Klein, Kyong-Rim Kieffer-Kwon, Mila Jankovic, Thiago Oliveira, Anne Bothmer, Ty C. Voss, Camilo Ansarah-Sobrinho, Ewy Mathe, Genqing Liang, Jesse Cobell, Hirotaka Nakahashi, Davide F. Robbiani, Andre Nussenzweig, Gordon L. Hager, Michel C. Nussenzweig and Rafael Casellas
In the absence of recurrent DNA damage, translocations between Igh or Myc and all other genes are directly related to their contact frequency. Conversely, translocations associated with recurrent site-directed DNA damage are proportional to the rate of DNA break formation, as measured by replication protein A accumulation at the site of damage.
January 27, 2012
Science 335: 436–441
Crystal structure of the human K2P TRAAK, a lipid- and mechano-sensitive K+ ion channel
Stephen G. Brohawn, Josefina del Mármol and Roderick MacKinnon
We present the crystal structure of human TRAAK at a resolution of 3.8 angstroms. The channel comprises two protomers, each containing two distinct pore domains, which create a two-fold symmetric K+ channel. The extracellular surface features a helical cap, 35 angstroms tall, that creates a bifurcated pore entryway and accounts for the insensitivity of two–pore domain K+ channels to inhibitory toxins. Two diagonally opposed gate-forming inner helices form membrane-interacting structures that may underlie this channel’s sensitivity to chemical and mechanical properties of the cell membrane.
January 22, 2012
Nature Genetics online: January 22, 2012
Epigenetic repression of cardiac progenitor gene expression by Ezh2 is required for postnatal cardiac homeostasis
Paul Delgado-Olguín, Yu Huang, Xue Li, Danos Christodoulou, Christine E. Seidman, J.G. Seidman, Alexander Tarakhovsky and Benoit G. Bruneau
We show that Ezh2 stabilizes cardiac gene expression and prevents cardiac pathology by repressing the homeodomain transcription factor gene Six1, which functions in cardiac progenitor cells but is stably silenced upon cardiac differentiation. Our results suggest that epigenetic dysregulation in embryonic progenitor cells is a predisposing factor for adult disease and dysregulated stress responses.
January 6, 2012
Cell Stem Cell 10: 63–75
Paracrine TGF-β Signaling Counterbalances BMP-Mediated Repression in Hair Follicle Stem Cell Activation
Naoki Oshimori and Elaine Fuchs
Hair follicle (HF) regeneration begins when communication between quiescent epithelial stem cells (SCs) and underlying mesenchymal dermal papillae (DP) generates sufficient activating cues to overcome repressive BMP signals from surrounding niche cells. Here, we uncover a hitherto unrecognized DP transmitter, TGF-β2, which activates Smad2/3 transiently in HFSCs concomitant with entry into tissue regeneration.
December 25, 2011
Nature Immunology online: December 25, 2011
B cell–helper neutrophils stimulate the diversification and production of immunoglobulin in the marginal zone of the spleen
Irene Puga, Montserrat Cols, Carolina M. Barra, Bing He, Linda Cassis, Maurizio Gentile, Laura Comerma, Alejo Chorny, Meimei Shan, Weifeng Xu, Giuliana Magri, Daniel M. Knowles, Wayne Tam, April Chiu, James B. Bussel, Sergi Serrano, José Antonio Lorente, Beatriz Bellosillo, Josep Lloreta, Nuria Juanpere, Francesc Alameda, Teresa Baró, Cristina Díaz de Heredia, Núria Torán, Albert Català, Montserrat Torrebadell, Claudia Fortuny, Victoria Cusí, Carmen Carreras, George A. Diaz, J Magarian Blander, Claire-Michèle Farber, Guido Silvestri, Charlotte Cunningham-Rundles, Michaela Calvillo, Carlo Dufour, Lucia Dora Notarangelo, Vassilios Lougaris, Alessandro Plebani, Jean-Laurent Casanova, Stephanie C. Ganal, Andreas Diefenbach, Juan Ignacio Aróstegui, Manel Juan, Jordi Yagüe, Nizar Mahlaoui, Jean Donadieu, Kang Chen and Andrea Cerutti
Neutrophils use immunoglobulins to clear antigen, but their role in immunoglobulin production is unknown. Here we identified neutrophils around the marginal zone (MZ) of the spleen, a B cell area specialized in T cell–independent immunoglobulin responses to circulating antigen.
December 23, 2011
Cell 147: 1615–1627
The functional organization of cutaneous low-threshold mechanosensory neurons
Lishi Li, Michael Rutlin, Victoria E. Abraira, Colleen Cassidy, Laura Kus, Shiaoching Gong, Michael P. Jankowski, Wenqin Luo, Nathaniel Heintz, H. Richard Koerber, C. Jeffery Woodbury and David D. Ginty
Here, we report genetic labeling of LTMR subtypes and visualization of their relative patterns of axonal endings in hairy skin and the spinal cord. We found that each of the three major hair follicle types of trunk hairy skin (guard, awl/auchene, and zigzag hairs) is innervated by a unique and invariant combination of LTMRs; thus, each hair follicle type is a functionally distinct mechanosensory end organ.
December 23, 2011
Science 344: 1675–1680
How a DNA polymerase clamp loader opens a sliding clamp
Brian A. Kelch, Debora L. Makino, Mike O’Donnell and John Kuriyan
We present structures for the ATP-bound state of the clamp loader complex from bacteriophage T4, bound to an open clamp and primer-template DNA. The structures explain how synergy among the loader, the clamp, and DNA can trigger ATP hydrolysis and release of the closed clamp on DNA.
December 14, 2011
Nature online: December 14, 2011
A microRNA regulon that mediates endothelial recruitment and metastasis by cancer cells
Kim J. Png, Nils Halberg, Mitsukuni Yoshida and Sohail F. Tavazoie
Here we reveal that endogenous miR-126, an miRNA silenced in a variety of common human cancers, non-cell-autonomously regulates endothelial cell recruitment to metastatic breast cancer cells, in vitro and in vivo. Through loss-of-function and epistasis experiments, we delineate an miRNA regulatory network’s individual components as novel and cell-extrinsic regulators of endothelial recruitment, angiogenesis and metastatic colonization.
December 11, 2011
Nature Genetics online: December 11, 2011
Mutations at a single codon in Mad homology 2 domain of SMAD4 cause Myhre syndrome
Carine Le Goff, Clémentine Mahaut, Avinash Abhyankar, Wilfried Le Goff, Valérie Serre, Alexandra Afenjar, Anne Destrée, Maja di Rocco, Delphine Héron, Sébastien Jacquemont, Sandrine Marlin, Marleen Simon, John Tolmie, Alain Verloes, Jean-Laurent Casanova, Arnold Munnich and Valérie Cormier-Daire
Using exome sequencing of individuals with Myhre syndrome, we identified SMAD4 as a candidate gene that contributes to this syndrome on the basis of its pivotal role in the bone morphogenetic pathway (BMP) and transforming growth factor (TGF)-β signaling. We identified three distinct heterozygous missense SMAD4 mutations affecting the codon for Ile500 in 11 individuals with Myhre syndrome.
December 4, 2011
Nature online: December 4, 2011
Open Structure of the Ca(2+) Gating Ring in the High-conductance Ca(2+)-activated K(+) Channel
Peng Yuan, Manuel D. Leonetti, Yichun Hsiung and Roderick MacKinnon
Here we present the Ca(2+)-bound conformation of the gating ring. This structure shows how one layer of the gating ring, in response to the binding of Ca(2+), opens like the petals of a flower. The degree to which it opens explains how Ca(2+) binding can open the transmembrane pore. These findings present a molecular basis for Ca(2+) activation of K(+) channels and suggest new possibilities for targeting the gating ring to treat conditions such as asthma and hypertension.
November 30, 2011
Cell online: November 30, 2011
Structural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ Subunit
Andrey Feklistov and Seth A. Darst
We determined crystal structures of σ domain 2 bound to single-stranded DNA bearing -10 element sequences. The structures, along with biochemical data, support a model where the recognition of the -10 element sequence drives initial promoter opening as the bases of the nontemplate strand are extruded from the DNA double-helix and captured by σ.
November 27, 2011
Nature online: November 27, 2011
GlcNAcylation of Histone H2B Facilitates its Monoubiquitination
Ryoji Fujiki, Waka Hashiba, Hiroki Sekine, Atsushi Yokoyama, Toshihiro Chikanishi, Saya Ito, Yuuki Imai, Jaehoon Kim, Housheng Hansen He, Katsuhide Igarashi, Jun Kanno, Fumiaki Ohtake, Hirochika Kitagawa, Robert G. Roeder, Myles Brown and Shigeaki Kato
In a genome-wide analysis, H2B S112 GlcNAcylation sites were observed widely distributed over chromosomes including transcribed gene loci, with some sites co-localizing with H2B K120 monoubiquitination. These findings suggest that H2B S112 GlcNAcylation is a histone modification that facilitates H2BK120 monoubiquitination, presumably for transcriptional activation.
November 23, 2011
Immunity 35: 819–831
Flt3 Signaling-Dependent Dendritic Cells Protect against Atherosclerosis
Jae-Hoon Choi, Cheolho Cheong, Durga B. Dandamudi, Chae Gyu Park, Anthony Rodriguez, Saurabh Mehandru, Klara Velinzon, In-Hyuk Jung, Ji-Young Yoo, Goo Taeg Oh and Ralph M. Steinman
Early events in atherosclerosis occur in the aortic intima and involve monocytes that become macrophages. We looked for these cells in the steady state adult mouse aorta, and surprisingly, we found a dominance of dendritic cells (DCs) in the intima.
November 13, 2011
Nature online: November 13, 2011
Structure of full-length Drosophila cryptochrom
Brian D. Zoltowski, Anand T. Vaidya, Deniz Top, Joanne Widom, Michael W. Young and Brian R. Crane
Here, we report a 2.3-Å resolution crystal structure of Drosophila CRY with an intact C terminus. The C-terminal helix docks in the analogous groove that binds DNA substrates in PLs. Conserved Trp 536 juts into the CRY catalytic centre to mimic PL recognition of DNA photolesions. The FAD anionic semiquinone found in the crystals assumes a conformation to facilitate restructuring of the tail helix. These results help reconcile the diverse functions of the CRY/PL family by demonstrating how conserved protein architecture and photochemistry can be elaborated into a range of light-driven functions.
October 28, 2011
Cell 147: 590–602
Molecular Architecture of the Transport Channel of the Nuclear Pore Complex
Sozanne R. Solmaz, Radha Chauhan, Günter Blobel and Ivo Melčák
The nuclear pore complex encloses a central channel for nucleocytoplasmic transport, which is thought to consist of three nucleoporins, Nup54, Nup58, and Nup62. However, the structure and composition of the channel are elusive. We determined the crystal structures of the interacting domains between these nucleoporins and pieced together the molecular architecture of the mammalian transport channel.
September 30, 2011
Cell 147: 199–208
Crystal Structure of the Mammalian GIRK2 K+ Channel and Gating Regulation by G Proteins, PIP2, and Sodium
Matthew R. Whorton and Roderick MacKinnon
Here, we present the first crystal structures of a G protein-gated K+ channel. By comparing the wild-type structure to that of a constitutively active mutant, we identify a global conformational change through which G proteins could open a G loop gate in the cytoplasmic domain. These data provide a structural basis for understanding multiligand regulation of GIRK channel gating.
A new approach gives researchers the ability to isolate single antibodies as well as investigate entire families of highly active antibodies against HIV.
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Stem cell researchers at Rockefeller University have identified stem cells of squamous cell skin carcinoma, the second most common cancer in the world, and their molecular signature. The researchers find differences between cancer stem cells and healthy skin stem cells, which provide invaluable diagnostic marker and suggests the possibility to specifically target the root of cancer while leaving normal cells unaffected. More »
Ruta, a neuroscientist interested in understanding how circuits in the brain can be modified by experience, will establish the Laboratory of Neurophysiology and Behavior this fall.
The Rockefeller University will award doctoral degrees to 23 students at its commencement ceremony today, and in addition, will award honorary doctor of science degrees to two respected scholars: Richard Axel of Columbia University and Linda B. Buck of the Fred Hutchinson Cancer Research Center. More »
A team of researchers led by scientists in the Laboratory of Virology and Infectious Disease at Rockefeller have, for the first time, recreated a portion of the hepatitis C virus life cycle in a mouse with a functional immune system. The new mouse model will enable scientists to test molecules that block entry of the hepatitis C virus into cells as well as potential vaccine candidates. More »
A new study by scientists at Rockefeller University and colleagues in the United States and Finland challenges measurements of carbon storage based on forest area alone. Several national increases of density and/or area signal the Great Reversal is under way in forests globally after centuries of loss and decline. More »
Brenda Milner, a pioneer in the field of cognitive neuroscience whose discoveries revolutionized the understanding of memory, will be awarded the 2011 Pearl Meister Greengard Prize from The Rockefeller University.
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A recent study by Rockefeller University researchers identifies natural variations in several genes that help determine when and where microscopic C. elegans worms feast. The impact of the gene variants on the worms’ foraging behavior was the most significant in borderline decisions, the researchers says, when the bacteria available to eat were neither scarce nor plentiful. More »
Rockefeller University’s President will receive the Memorial Sloan-Kettering Medal for Outstanding Contributions to Biomedical Research at MSKCC’s 2011 Academic Convocation. More »
Jean-Laurent Casanova has received the 2011 InBev-Baillet Latour Health Prize, Belgium’s most important scientific prize, for his pioneering work on the identification of genes that predispose for human infectious disease. More »
Michel C. Nussenzweig, Sherman Fairchild Professor and head of the Laboratory of Molecular Immunology, was elected a member of the National Academy of Sciences at the Academy’s annual meeting today, in recognition of his deep contributions to our understanding of the workings of the innate and adaptive immune systems. More »
The proteasome plays a key role in the differentiation of specialized cells and in maintaining them as they age. The ability to manipulate the proteasome has already been useful in the treatment of multiple myeloma; it could help treat other cancers and degenerative disorders including Parkinson’s and Alzheimer’s as well. New research identifies a key protein, called DmPI31, that regulates the proteasome, which could provide researchers a handle for using it to good medical effect. “Controlled proteolysis is essential for many cell biological functions,” says Hermann Steller, head of the Strang Laboratory of Apoptosis and Cancer Biology. “There had been the impression that the proteasome is just a brute ‘shredder,’ but it doesn’t run at full steam all the time. It’s modulated, and these findings give us new ideas for designing small molecules that regulate proteasome activity.” More »
Scientists have shown that anti-inflammatory drugs, which include ibuprofen, aspirin and naproxen, reduce the effectiveness of the most widely used class of antidepressant medications, the selective serotonin reuptake inhibitors, or SSRIs, often prescribed for depression and obsessive-compulsive and anxiety disorders. More »
Ausubel, a researcher who studies environmental science and technology and industrial evolution, is honored with election to the prestigious independent policy research academy. More »
A key component of the nuclear pore complex — a Y-shaped cluster of proteins that helps determine what gets in and what stays out of a cell’s nucleus — was first photographed and modeled at Rockefeller in 2009. But fundamental questions about how the structures were aligned in relation to the rest of the 30-protein complex remained. Researchers at Rockefeller University have now developed a new technique that uses polarized light microscopy to help answer questions about the proteins’ orientation. More »
Rockefeller University’s Fernando Nottebohm will receive The Mortimer D. Sackler Prize for Distinguished Achievement in Developmental Psychobiology in recognition of his seminal work in songbirds that has led to the discovery of neuronal replacement. More »
A team of researchers, led by scientists from Rockefeller University, for the first time has carried out a comprehensive, systematic evaluation of the antiviral activity of factors induced by interferon. The findings, published online today in the journal Nature, are a first step toward unraveling how these naturally occurring molecules work to inhibit viruses. More »
The ever escalating war between evolving bacteria and antibiotics could be taking a promising turn in favor of the humans. Scientists have genetically engineered a powerful killer of one of the most dangerous bacteria, methicillin-resistant Staphylococcus aureus (MRSA). It’s been tested on MRSA in the test tube, on infections in mice and a clinical trial has begun to probe its ability to kill MRSA infected cells from psoriasis lesions in people. Next up, per the recommendation of the FDA, is a test in minipigs. “It’s the start of a new class of drugs,” says the lead researcher, and early signs suggest it’s stronger than anything of its kind currently on the market. More »
Bruce S. McEwen, a pioneer in understanding how hormones affect the brain, will receive the 2011 Edward M. Scolnick Prize in Neuroscience from the McGovern Institute for Brain Research at MIT. McEwen is being honored for research on how hormones affect the brain’s structure, how they shape responses to stress, how they contribute to sexual differences and how they affect our health and well-being. More »
Getting kicked around is no fun for anyone, but researchers are finding that it’s not just the body that’s bruised, but the brain, too. New experiments from Rockefeller show that mice that are repeatedly bullied by by dominant males grow unusually anxious around new company, threatening or not. The behavioral change seems to be in part due to a change in gene expression that increases sensitivity to vasopressin, a hormone involved in a variety of social behaviors. More »